For all other tasks that can be achieved with the CLC genomics workbench client, it works the same way. Submitting jobs from the CLC genomics workbench clientĪs an example for demonstrating how to submit a job from the CLC genomics workbench client to the Euler cluster, we choose a BLAST search. Mounting NAS shares from the IT services storage group been tested on Euler and should work. For this, one has to click on a file in the local CLC data location and move it to the server data location that is attached to each CLC genomics server account. On one hand, the data can directly be imported into the CLC genomics workbench client and then be moved to the server data location by drag-and-drop within the client. In general there are two different ways of importing data to a server data location. Please note that there is no backup for these data sets. After the jobs have finished, the results should be copied back on a local machine or any other storage location. Unless a user owns some permanent space in Euler, the server data locations are considered as scratch space that can be used for temporary storage of data and will be purged on a regular basis. Therefore we attach a server data location (one folder) to each CLC genomics server account that is created on Euler. The user data that is processed by the CLC genomics server installation on Euler first needs to be imported into the server. You will only be able to see and use the content of your own data location (unless you explicitly ask us to change the permissions in case you would like to share data with other users). When connected to the CLC genomics server, you will be able to see all server data locations (the folder with a blue dot next to them) but not their content. Then click on the Login buttonĪfter the login procedure, the server data locations are displayed in the Navigation Area menu. Click on "Advanced" and enter as server host and 7777 as server port.
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